Community consensus of cell identities
in single-cell transcriptomics
Explore and review existing
cell annotations
cell annotations
Contribute to how cell types
and cell states defined
and cell states defined
Blog
Inspect cell annotations of single-cell atlases
Gain deeper insights into cell identity by exploring, reviewing, and comparing expert annotations across single-cell atlases.
Explore Cell Label
Metadata
Discover how others define cell types with key markers and evidence to inspire your own analyses.
FMB
Review Transcriptomics Signatures
Evaluate published cell annotations, share your feedback, and help shape more accurate and reliable cell types.
Study Other Scientists' Feedback
Learn from community insights and see how peers interpret and validate cell labels to broaden your understanding.
Contribute & Publish
Cell Annotations
Create Draft Publication
Add the description and invite collaborators
Upload AnnData Files
We’ll process your h5ad files and configure the tools to enable analysis and visualization
Annotate
Provide cell annotations along with justifications and crucial context (marker genes, synonyms, etc.)
Publish Your Data
The published version of your draft is publicly accessible on CAP
Define Cell Metadata
Analize molecular data, create and explain annotations
Collaborate
Invite others to annotate and review datasets in your draft
Carla
Cohen
Cohen
Owner
Rui
Chen
Chen
Admin
Nelson
Johansen
Johansen
Editor
Jin
Li
Li
Viewer
Publish New Versions
Keep working on your draft and publish new versions, each with its own DOI for accurate citation
Collect Feedback
Receive collaborator feedback on cell annotations in drafts and community feedback in publications
Molecular Data
Powerful tools for exploring and
creating cell annotations
Inspect Cell Annotations
Examine how the cell annotations are defined with rich user-provided labels, rationales, synonyms, and marker gene evidence.