We are excited to announce the release of the Human Cell Atlas Kidney (HCKA) v1, a comprehensive single-cell reference map of the human kidney across health and disease. The resource integrates approximately 1 million high-quality single-cell and single-nucleus transcriptomes collected from 18 datas...
We are excited to announce that the Human Adipose Tissue Atlas (HATA) is now publicly available on CAP. Adipose tissue (AT) is a highly dynamic organ serving metabolic, endocrine, and immune functions that collectively regulate systemic energy homeostasis and thermogenesis. It is organized into ana...
The integrated Human Breast Cell Atlas (iHBCA) is now available on CAP. iHBCA v1.0 is a cross-study single-cell reference of the human breast, harmonizing 2,128,505 cells from 287 donors across seven published studies (Gray 2022, Kumar 2023, Murrow 2022, Nee 2023, Pal 2021, Reed 2024 and Twigger 20...
We are excited to announce the release of new datasets from the Human Cell Atlas (HCA) BioNetworks, spanning the Gut, Musculoskeletal, and Adipose systems. The Gut BioNetwork focuses on building a detailed cellular map of the intestinal tract—one of the most complex and dynamic systems in the human...
We updated the CAP AnnData Schema to prevent collisions with other schemas. From now on, all uns fields are isolated in a dedicated uns\["cap\_metadata"] container, except for the title field, which remains at the root of the uns section. Most users should not notice these changes, as we automatic...
Release 2.4.2 is now available - thank you for your patience! This update focuses on making the product smoother, faster, and easier to use. What's improved: This release took longer than expected, and some of you may have experienced issues with uploads or dataset editing along the way. We're sor...
We are happy to announce that the Human Gut Cell Atlas (HGCA) is now publicly available on CAP. The HGCA brings together the collective expertise of gut biologists, clinicians, and data generators to create a community-driven, healthy reference for the human gut. It integrates 27 datasets representi...
We’ve introduced a new Tools section in our documentation to make it easier to find and use our resources. The Tools section includes: You can visit the Tools section of the CAP documentation to learn more about installation and usage examples.
We have a new publication on our site: A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain, generated by the Allen Institute for Brain Science. The whole mouse brain atlas includes neuronal and non-neuronal cell types and is a resource for the neuroscience comm...
Owners and admins can now disable the download button for AnnData .h5ad files in both draft and published publications. This feature gives you more control over data sharing, especially for collecting expert feedback on cell annotations for datasets not yet published in scientific journals. Natura...
We've added a new Tree View mode to the Molecular Data page, alongside the existing flat list of labelsets. This feature will be particularly useful for 🧠 taxonomies generated by the Allen Institute for Brain Science and the NIH BRAIN Initiative Cell Census Network. If your dataset’s labels are o...
This is the official blog of the Cell Annotation Platform. Here we will share updates about new datasets, platform features, and improvements. Our goal is to keep the community informed about ongoing developments and provide context around the tools and resources we make available. Stay tuned for th...
