Human myotendinous junction snRNAseq

Main

Cell Metadata

Fib

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: COL1A2, COL3A1, FAP, DCN, TCF7L2, PDGFRA
Canonical Marker Genes: unknown
Rationale: Fibroblast cluster annotated based on expression of COL1A2, COL3A1, FAP, DCN, TCF7L2 and PDGFRA.

Set of Labels Description: Main nuclei types were defined using FindNeighbours, based on principal component analysis (PCA; 30 dimensions), and the Seurat graph-based method FindClusters, for clustering using manually selected resolution between 0.2 and 0.9 for best separations.
Annotation Method: manual

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: COL1A2, COL3A1, FAP, DCN, TCF7L2, PDGFRA
Canonical Marker Genes: unknown
Rationale: Fibroblast cluster annotated based on expression of COL1A2, COL3A1, FAP, DCN, TCF7L2 and PDGFRA.

Set of Labels Description: Main nuclei types were defined using FindNeighbours, based on principal component analysis (PCA; 30 dimensions), and the Seurat graph-based method FindClusters, for clustering using manually selected resolution between 0.2 and 0.9 for best separations.
Annotation Method: manual