snRNA-seq of human retina - retinal ganglion cell subset

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Cell Metadata

HRGC9

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: RGC, ganglion cell of retina, RGCs, gangliocyte
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NRP1, GRM7, DAPK1, KCNH5, DAPL1, SEMA5A, AK5, NOS1AP, SATB2, SIX3, ANKRD30BL
Canonical Marker Genes: unknown
Rationale: 71.2%Unassigned+25.0%hRGC8 of the Sanes dataset; 78.6%Unassigned+18.4%RGC7 of the Shekhar dataset; 62.8%RGC16+30.6%Unassigned of the macaque dataset; 76.5%19_Novel+19.1%Unassigned of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: RGC, ganglion cell of retina, RGCs, gangliocyte
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NRP1, GRM7, DAPK1, KCNH5, DAPL1, SEMA5A, AK5, NOS1AP, SATB2, SIX3, ANKRD30BL
Canonical Marker Genes: unknown
Rationale: 71.2%Unassigned+25.0%hRGC8 of the Sanes dataset; 78.6%Unassigned+18.4%RGC7 of the Shekhar dataset; 62.8%RGC16+30.6%Unassigned of the macaque dataset; 76.5%19_Novel+19.1%Unassigned of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual