Cell Annotation
Platform

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Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera

Main

Cell Metadata

Ontology Term: conjunctival epithelial cellCL:1000432
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: epithelial cell of conjunctiva
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AQP5, KRT19, F3, STK39, INSR, LINC01889, CP, KRT13, ANK3, PDLIM5
Canonical Marker Genes: KRT13, KRT19
Rationale: 97.4% Conj_Epi-Superficial+32.4% Conj_Epi-Wing+92.6% Limbal_Epi-Superficial from Sanes datasets; majorclass annotated by PAX6, celltype annotated by KRT13, KRT4

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual