Stellate cells

Ontology Term

hepatic stellate cellCL:0000632

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

ITO cell

Category

Class of which the cell type is a subclass.

fibroblastCL:0000057

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

LHX2, HHIP, CCBE1, HGF, LAMA2, CARMN, PAMR1, RP11-383H13.1, HAND2-AS1, PLA2G5

Canonical Marker Genes

DCN, COL1A2, COL5A1, COL3A1

Rationale

The marker genes are the top 10 DEGs for these cells compared with other cells in the UMAP (from Table S3 in publication). Other canonical marker genes used include DCN and various collagen genes.

Inherited from author_cell_type

Set of Labels Description

Annotation of cell types included in dataset based on prior knowledge.

Annotation Method

manual