Myeloid cells from human liver dataset

Mono

Ontology Term

classical monocyteCL:0000860

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

inflammatory monocyte

Category

Class of which the cell type is a subclass.

monocyteCL:0000576

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

S100A8, S100A12, S100A9, VCAN, FCAR, THBS1, EREG, MGST1, RP11-1143G9.4, ASGR1

Canonical Marker Genes

VCAN, FCN1, LYZ, SELL, CD14

Rationale

The marker genes are the top 10 DEGs for this cell population compared with the others (from Table S2 in publication). Canonical marker genes are used throughout literature.

Inherited from author_cell_type

Set of Labels Description

Annotation of cell types in dataset based on prior knowledge

Annotation Method

manual