snRNA-seq of human optic nerve and optic nerve head - all cells
Cell Metadata
DB5
- Ontology Term
- type 5a cone bipolar cellCL:0004215
- SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.
- DB5 cell
- CategoryClass of which the cell type is a subclass.
- cone ONCL:0000749
- Ontology AssessmentDisagreements with any aspect of the Cell Ontology.
- —
- Canonical Marker Genes
- MYO16
- Rationale
- Predicted as DB5 based on human retina cell atlas reference using scArches
- Rationale DOI
- https://doi.org/10.1101/2023.11.07.566105
Inherited from author_cell_type
- Set of Labels Description
- We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
- Annotation Method
- both
- Algorithm Name
- scVI
- Algorithm Version
- scvi-tools 1.3.0
- Algorithm URL
- https://github.com/scverse/scvi-tools