snRNA-seq of human optic nerve and optic nerve head - all cells

Schwann_cell_nonmyelinating

Ontology Term

non-myelinating Schwann cellCL:0002376

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

non-myelinating Schwann cell

Category

Class of which the cell type is a subclass.

Schwann cellCL:0002573

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

SOX6, PTPRZ1, NRXN1

Canonical Marker Genes

SOX6, PTPRZ1, NRXN1

Rationale

This non-myelinating Schwann cell sub-class is annotated by the marker SOX6, PTPRZ1, and NRXN1.

Rationale DOI

https://doi.org/10.1073/pnas.2306153120

Inherited from author_cell_type

Set of Labels Description

We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

scvi-tools 1.3.0

Algorithm URL

https://github.com/scverse/scvi-tools