Human liver cell atlas - endothelia cells

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Cell Metadata

Periportal LSEC

Ontology Term: endothelial cell of periportal hepatic sinusoidCL:0019021
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cell of hepatic sinusoidCL:1000398
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD36
Canonical Marker Genes: CD36
Rationale: In addition to positive markers listed these cells were CD14-, LYVE1-Lo

Set of Labels Description: HLiCA classifies cells into six lineages and 48 distinct cell types, 18 more than previous studies. Rigorous benchmarking ensured robust integration across technical and biological variables. Expanded annotations allowed identification of previously undetected liver cell types. As the largest human liver cell atlas, HLiCA serves as a genetically diverse, well-annotated reference.
Annotation Method: both
Algorithm Name: CIPR
Algorithm Version: v1
Algorithm URL: https://github.com/atakanekiz/CIPR-Package

Ontology Term: endothelial cell of periportal hepatic sinusoidCL:0019021
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cell of hepatic sinusoidCL:1000398
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD36
Canonical Marker Genes: CD36
Rationale: In addition to positive markers listed these cells were CD14-, LYVE1-Lo

Set of Labels Description: HLiCA classifies cells into six lineages and 48 distinct cell types, 18 more than previous studies. Rigorous benchmarking ensured robust integration across technical and biological variables. Expanded annotations allowed identification of previously undetected liver cell types. As the largest human liver cell atlas, HLiCA serves as a genetically diverse, well-annotated reference.
Annotation Method: both
Algorithm Name: CIPR
Algorithm Version: v1
Algorithm URL: https://github.com/atakanekiz/CIPR-Package