HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

Secretory Tuft Cells

Ontology Term: tuft cellCL:0002204
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: POU2F3, SH2D6, LRMP, TRPM5, SOX4, CD24, SPIB, IRAG2
Canonical Marker Genes: POU2F3, TRPM5, LRMP
Rationale: Tuft cells are rare in single cell data, these often have POU2F3 in gene lists but LRMP is a more distinct marker

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: tuft cellCL:0002204
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: POU2F3, SH2D6, LRMP, TRPM5, SOX4, CD24, SPIB, IRAG2
Canonical Marker Genes: POU2F3, TRPM5, LRMP
Rationale: Tuft cells are rare in single cell data, these often have POU2F3 in gene lists but LRMP is a more distinct marker

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic