HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

EEC Progenitor

Ontology Term: intestinal enteroendocrine progenitorCL:4052006
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enteroendocrine cellCL:0000164
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NEUROG3
Canonical Marker Genes: NEUROG3, DLL1
Rationale: NEUROG3 expression identifies EEC subclusters that are just starting their differentiation away from secretory progenitor / epithstem identity towards EEC subtypes
Rationale DOI: 10.1038/s41467-021-27901-5

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: intestinal enteroendocrine progenitorCL:4052006
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enteroendocrine cellCL:0000164
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NEUROG3
Canonical Marker Genes: NEUROG3, DLL1
Rationale: NEUROG3 expression identifies EEC subclusters that are just starting their differentiation away from secretory progenitor / epithstem identity towards EEC subtypes
Rationale DOI: 10.1038/s41467-021-27901-5

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic