Human lymph nodes with partial T and B cell depletion

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Cell Metadata

Endothelial_cells

Ontology Term: endothelial cellCL:0000115
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: eukaryotic cellCL:0000255
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PECAM1, PLVAP, ACKR1, CD74, AQP1
Canonical Marker Genes: PECAM1, PLVAP, ACKR1
Rationale: Relative lack of PTPRC compared to other subsets, expression of PECAM1, PROX1 and LYVE1 indicating mixture of blood endothelial and lymphatic endothelial cells
Rationale DOI: https://doi.org/10.1038/s41556-022-00866-3

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual

Ontology Term: endothelial cellCL:0000115
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: eukaryotic cellCL:0000255
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PECAM1, PLVAP, ACKR1, CD74, AQP1
Canonical Marker Genes: PECAM1, PLVAP, ACKR1
Rationale: Relative lack of PTPRC compared to other subsets, expression of PECAM1, PROX1 and LYVE1 indicating mixture of blood endothelial and lymphatic endothelial cells
Rationale DOI: https://doi.org/10.1038/s41556-022-00866-3

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual