Human lymph nodes with partial T and B cell depletion

Main

Cell Metadata

Monocytes_Macrophages

Ontology Term: mononuclear phagocyteCL:0000113
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: mononuclear leukocyteCL:0000842
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD68, C1QA, CD74, HLA-DRA
Canonical Marker Genes: CD68, HLA-DR, FGR,
Rationale: This cell type was annotated based on expression of CD68, CD74, CD14, FCGR3A, mixed markers of macrophages and monocytes
Rationale DOI: 10.1016/j.immuni.2024.01.006

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual

Main

Cell Metadata

Ontology Term: mononuclear phagocyteCL:0000113
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: mononuclear leukocyteCL:0000842
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD68, C1QA, CD74, HLA-DRA
Canonical Marker Genes: CD68, HLA-DR, FGR,
Rationale: This cell type was annotated based on expression of CD68, CD74, CD14, FCGR3A, mixed markers of macrophages and monocytes
Rationale DOI: 10.1016/j.immuni.2024.01.006

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual