Human intercostal skeletal muscle aging atlas (scRNA-seq and snRNA-seq, young vs aged)

CapEC

Ontology Term

capillary endothelial cellCL:0002144

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

capillary EC, microvascular endothelial cell

Category

Class of which the cell type is a subclass.

endothelial cellCL:0000115

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CA4, RGCC, FABP4

Canonical Marker Genes

CA4, RGCC, KDR

Rationale

This cell was annotated manually using canonical markers in the field (CA4, RGCC, FABP4). We noticed GPIHBP1, CLDN5, FABP4 running differential expression. Capillary microvasculature endothelium.

Rationale DOI

10.1038/s41591-024-03376-x

Inherited from author_cell_type

Set of Labels Description

Displayed cell annotations represent 43 coarse cell type clusters derived using combined manual and automatic annotation using CellTypist.

Annotation Method

both

Algorithm Name

CellTypist

Algorithm Version

v1.7

Algorithm URL

https://github.com/Teichlab/celltypist