These are epithelial cells based. onKRT18 expression and they are not clearly fitting into goblet, EEC, paneth, or other specific secretory cell subsets, but they are high in SPINK1, REG1A/B, and LCN2. LCN2 and SPINK1 are secreted enzymes
Inherited from celltype
Set of Labels Description
In this paper we used an automated iterative subclustering algorithm to find hundreds of cell state clusters, after which we merged unsupported clusters and annotated each resulting cluster with a better-known cell subtype. The high-res cell state clusters are annotated as subtype.gene1.gene2, so in some cases we didn't directly name some commonly named subtypes, such as pericytes. When we run DE on the resulting subtypes, we find many canonical and scRNA-suggested marker genes.
