Cell Annotation Platform

v1 An integrated transcriptomic cell atlas of human neural organoids
The Human Neural Organoid Atlas

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An effort by the Villani, Kharchenko, Gehlenborg, Theis, Marioni, and Regev labs.

The Human Neural Organoid Atlas | CAP

The Human Neural Organoid Atlas

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Cell Metadata

PSC

Ontology Term: pluripotent stem cellCL:0002248
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: somatic stem cellCL:0000723
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: POU5F1
Canonical Marker Genes: POU5F1
Rationale: Cells expressing canonical pluripotent stem cell markers in organoids.

Inherited from annot_level_2

Set of Labels Description: Finer curated cell type annotation of the integrated HNOCA.
Annotation Method: both
Algorithm Name: snapseed
Algorithm Version: 0.1.0
Algorithm URL: https://github.com/devsystemslab/snapseed