Cross-species Spinal Cord Atlas: Non-Neurons

Summary

Metadata

Dataset Type

Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.

Total Cells

122,011

disease

normal

organism

Mus musculus (52,448 cells)Macaca mulatta (51,656 cells)Homo sapiens (17,907 cells)

tissue

Spinal cord

assay

10x multiome

species

Mouse (52,448 cells)Macaque (51,656 cells)Human (17,907 cells)

anatomical_region

Cervical (36,792 cells)Thoracic (35,936 cells)Lumbar (26,490 cells)Sacral (22,713 cells)unknown (80 cells)

donor_name

Mouse_1 (52,448 cells)QN24.26.001 (23,086 cells)H20.30.002 (15,686 cells)QN24.26.004 (14,952 cells)QN22.26.011 (4,474 cells)QN22.26.016 (3,566 cells)QN23.26.012 (3,335 cells)QN23.26.001 (2,243 cells)H19.30.003 (1,193 cells)H19.30.001 (1,028 cells)

spinalcord_dissection

unknown (70,355 cells)Unbiased (29,257 cells)Ventral_horn (22,399 cells)

nearest_development_origin

nan (60,106 cells)dp2 (8,246 cells)FP (8,141 cells)dp3 (7,479 cells)dp6 (6,070 cells)Null_Neuron (4,915 cells)RP (3,898 cells)Null_Progenitor (3,356 cells)dp1 (3,317 cells)pMN (2,780 cells)dp4 (2,262 cells)dp5 (2,051 cells)p3 (1,805 cells)p1 (1,599 cells)p0 (1,070 cells)V2a (955 cells)dl5 (777 cells)p2 (732 cells)V1 (681 cells)V2b (443 cells)Outliers (377 cells)MN (353 cells)dl2 (317 cells)dl3 (131 cells)V0 (72 cells)dl4 (45 cells)dl1 (19 cells)V3 (12 cells)dl6 (2 cells)

Cell Labels

Class

Description

Cell annotation set for Class

Annotation Method

manual

Cell Labels (1)

Cells (122,011)

Non-Neurons

122,011

Subclass

Description

Cell annotation set for Subclass

Annotation Method

manual

Cell Labels (10)

Cells (122,011)

Oligo

55,417

Microglia

24,371

Astrocytes

22,423

Ependymal

8,968

OPC

6,344

Vascular

2,004

Endo

1,593

Macrophages

378

Lymphocytes

313

Schwann

200

Group

Description

Cell annotation set for Group

Annotation Method

manual

Cell Labels (14)

Cells (122,011)

Oligo-1

28,359

Oligo-2

26,441

Microglia

24,371

GM Astrocytes

11,844

WM Astrocytes

10,579

Ependymal

8,968

OPC

6,344

Ven/Cap Endothelial

1,593

Meninges

1,593

Oligo Progenitor

617

Pericytes/SM

411

Macrophages

378

Cluster

Description

Cell annotation set for Cluster

Annotation Method

manual

Cell Labels (60)

Cells (122,011)

2

19,424

17

18,170

105

16,136

25

8,570

106

5,645

145

5,202

104

4,024

9

3,865

7

3,858

14

3,378

103

2,320

24

2,262