CAP Seurat Converter

The CAP Seurat converter package provides functions to convert AnnData (.h5ad) files to Seurat v5 objects and saves them as a serialized *rds file in R. The package was created specifically for the Cell Annotation Project (CAP), so please test it first to see it it meets your requirements. It is written in pure R, with no reticulate dependencies. The package currently supports AnnData (.h5ad) files created via AnnData v0.10+ and converts the following fields: X, obs, var, raw.X, raw.var, obsm, and uns.

Please see the GitHub repo for more information: CAP Seurat converter GitHub repo